STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMIS_54830Hypothetical protein; Xylose isomerase-like TIM barrel. (260 aa)    
Predicted Functional Partners:
AMIS_54820
Hypothetical protein; PKD domain.
 
  
 0.931
AMIS_12340
Putative oxidoreductase.
 
  
 0.669
AMIS_45470
Putative TatD-related DNase.
 
  
 0.650
AMIS_45500
Putative transferase.
 
   
 0.625
iolD
Putative myo-inositol catabolism protein IolD; Belongs to the TPP enzyme family.
 
  
 0.624
AMIS_4860
Putative oxidoreductase.
 
  
 0.621
AMIS_45450
Putative type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.611
AMIS_45480
Hypothetical protein.
 
     0.596
AMIS_25140
Hypothetical protein; Ricin-type beta-trefoil lectin domain, Carbohydrate binding module (family 6).
 
  
 0.589
iolB
Putative myo-inositol catabolism protein IolB.
 
  
 0.563
Your Current Organism:
Actinoplanes missouriensis
NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.