Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMIS_41610 | AMIS_73050 | AMIS_41610 | AMIS_73050 | Putative phage integrase; Belongs to the 'phage' integrase family. | Hypothetical protein; Belongs to the SOS response-associated peptidase family. | 0.794 |
AMIS_73010 | AMIS_73020 | AMIS_73010 | AMIS_73020 | Putative anti-sigma factor. | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.988 |
AMIS_73010 | AMIS_73030 | AMIS_73010 | AMIS_73030 | Putative anti-sigma factor. | Hypothetical protein. | 0.699 |
AMIS_73010 | AMIS_73050 | AMIS_73010 | AMIS_73050 | Putative anti-sigma factor. | Hypothetical protein; Belongs to the SOS response-associated peptidase family. | 0.539 |
AMIS_73010 | aroA | AMIS_73010 | AMIS_73060 | Putative anti-sigma factor. | Putative 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.474 |
AMIS_73010 | whiB-3 | AMIS_73010 | AMIS_73040 | Putative anti-sigma factor. | Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.685 |
AMIS_73020 | AMIS_73010 | AMIS_73020 | AMIS_73010 | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Putative anti-sigma factor. | 0.988 |
AMIS_73020 | AMIS_73030 | AMIS_73020 | AMIS_73030 | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.699 |
AMIS_73020 | AMIS_73050 | AMIS_73020 | AMIS_73050 | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Belongs to the SOS response-associated peptidase family. | 0.539 |
AMIS_73020 | AMIS_73080 | AMIS_73020 | AMIS_73080 | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Putative inositol monophosphatase. | 0.421 |
AMIS_73020 | aroA | AMIS_73020 | AMIS_73060 | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Putative 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.474 |
AMIS_73020 | rsgA-2 | AMIS_73020 | AMIS_73070 | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Putative GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.439 |
AMIS_73020 | whiB-3 | AMIS_73020 | AMIS_73040 | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.792 |
AMIS_73030 | AMIS_73010 | AMIS_73030 | AMIS_73010 | Hypothetical protein. | Putative anti-sigma factor. | 0.699 |
AMIS_73030 | AMIS_73020 | AMIS_73030 | AMIS_73020 | Hypothetical protein. | Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.699 |
AMIS_73030 | AMIS_73050 | AMIS_73030 | AMIS_73050 | Hypothetical protein. | Hypothetical protein; Belongs to the SOS response-associated peptidase family. | 0.607 |
AMIS_73030 | aroA | AMIS_73030 | AMIS_73060 | Hypothetical protein. | Putative 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.512 |
AMIS_73030 | rsgA-2 | AMIS_73030 | AMIS_73070 | Hypothetical protein. | Putative GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.400 |
AMIS_73030 | whiB-3 | AMIS_73030 | AMIS_73040 | Hypothetical protein. | Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.806 |
AMIS_73050 | AMIS_41610 | AMIS_73050 | AMIS_41610 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. | Putative phage integrase; Belongs to the 'phage' integrase family. | 0.794 |
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