STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ01303.1Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1045 aa)    
Predicted Functional Partners:
ALI98718.1
DNA mismatch repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.673
ALJ01290.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
ALI98936.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.516
ALJ01304.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.445
ALJ01590.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
ALI99166.1
Penicillin amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
Your Current Organism:
Rufibacter tibetensis
NCBI taxonomy Id: 512763
Other names: CCTCC AB 208084, NRRL B-51285, R. tibetensis, Rufibacter tibetensis Abaydulla et al. 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.