Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALI99296.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
ALI99297.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.878
ALI99032.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.818
ALJ01559.1
Spheroidene monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.744
ALJ01117.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.718
ALI97874.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.688
ALI97871.1
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.561
ALJ01387.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.452
ALI97877.1
Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.450
ALI98420.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
Your Current Organism:
Rufibacter tibetensis
NCBI taxonomy Id: 512763
Other names: CCTCC AB 208084, NRRL B-51285, R. tibetensis, Rufibacter tibetensis Abaydulla et al. 2014
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