STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zc3h8Zinc finger CCCH type containing 8. (305 aa)    
Predicted Functional Partners:
Cpsf2
Cleavage and polyadenylation specific factor 2.
   
 0.969
Cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.969
Rbbp6
Retinoblastoma binding protein 6, ubiquitin ligase.
    
 0.968
Cpsf3
Cleavage and polyadenylation specificity factor 3.
   
 0.965
Sympk
Symplekin.
   
 0.963
Cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
 0.961
Cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
   
 0.959
Nudt21
Nudix (nucleoside diphosphate linked moiety X)-type motif 21.
    
 0.957
Clp1
CLP1, cleavage and polyadenylation factor I subunit.
    
 0.930
ENSJJAP00000009806
annotation not available
    
 0.918
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.