STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSJJAP00000003271annotation not available (333 aa)    
Predicted Functional Partners:
ENSJJAP00000004916
annotation not available
 
  
   0.887
Rdh8
Retinol dehydrogenase 8.
  
 
0.831
Aldh1a3
Aldehyde dehydrogenase family 1, subfamily A3.
  
 0.794
Cyb5r4
Cytochrome b5 reductase 4.
  
 0.789
ENSJJAP00000018957
annotation not available
  
 0.789
Col4a1
Collagen, type IV, alpha 1.
    
  0.774
Col4a4
Collagen, type IV, alpha 4.
    
  0.774
Col1a2
Collagen, type I, alpha 2.
    
  0.774
Rdh10
Retinol dehydrogenase 10 (all-trans).
   
 
 0.773
Lrat
Lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase).
     
 0.769
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.