STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zc2hc1cZinc finger, C2HC-type containing 1C. (519 aa)    
Predicted Functional Partners:
Leo1
Leo1, Paf1/RNA polymerase II complex component.
   
 
 0.956
ENSJJAP00000008107
annotation not available
   
   0.899
U2af2
U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2.
    
 
 0.849
ENSJJAP00000022893
annotation not available
   
 
 0.821
ENSJJAP00000024580
annotation not available
   
 
 0.821
Sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.815
Sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.806
Ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 
 0.795
Sart1
Squamous cell carcinoma antigen recognized by T cells 1.
   
   0.793
Snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 
 0.789
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.