STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pdcd7Programmed cell death 7. (298 aa)    
Predicted Functional Partners:
Snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 0.972
Smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
    
 0.917
Actl6a
Actin-like 6A.
    
 0.915
Mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.913
Pbrm1
Polybromo 1.
    
 0.910
Snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 0.900
Smarce1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
    
 0.898
Snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
   
 0.889
Phf10
PHD finger protein 10.
    
 0.876
Arid1a
AT rich interactive domain 1A (SWI-like).
    
 0.808
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.