STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ldlrad4Low density lipoprotein receptor class A domain containing 4. (306 aa)    
Predicted Functional Partners:
Rrp12
Ribosomal RNA processing 12 homolog (S. cerevisiae).
   
   0.835
Tsr1
TSR1 20S rRNA accumulation.
   
  0.829
Trmt112
tRNA methyltransferase 11-2.
   
 0.820
Nhp2
NHP2 ribonucleoprotein.
   
 0.788
Noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
   0.780
Wdr3
WD repeat domain 3.
   
   0.773
Rpf2
Ribosome production factor 2 homolog.
   
    0.771
Gtpbp4
GTP binding protein 4.
   
    0.770
Smad3
SMAD family member 3.
    
 0.764
Smad2
SMAD family member 2.
    
 0.764
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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