STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmcd1LIM and cysteine-rich domains 1. (365 aa)    
Predicted Functional Partners:
Gata6
GATA binding protein 6.
    
 0.899
Gata5
GATA binding protein 5.
    
 0.730
ENSJJAP00000017661
annotation not available
    
 0.730
Gata1
GATA binding protein 1.
    
 0.698
Vangl2
VANGL planar cell polarity 2.
    
 0.616
Vangl1
VANGL planar cell polarity 1.
    
 0.616
Dvl2
Dishevelled segment polarity protein 2.
    
 0.602
Dvl3
Dishevelled segment polarity protein 3.
    
 0.602
Dvl1
Dishevelled segment polarity protein 1.
    
 0.602
Afdn
Afadin, adherens junction formation factor.
    
 0.569
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.