STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trmt1tRNA methyltransferase 1. (654 aa)    
Predicted Functional Partners:
Tbl3
Transducin (beta)-like 3.
   
    0.856
Rpf2
Ribosome production factor 2 homolog.
   
  
 0.821
Utp4
UTP4 small subunit processome component.
   
    0.794
Ddx27
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27.
  
   0.784
Nsun6
NOL1/NOP2/Sun domain family member 6.
   
 
 0.779
Bop1
Block of proliferation 1.
   
    0.778
Wdr46
WD repeat domain 46.
   
    0.778
Noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
    0.776
Trmt6
tRNA methyltransferase 6.
   
  
 0.771
Mettl1
Methyltransferase like 1.
   
 
 0.747
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.