STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vipas39VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog. (476 aa)    
Predicted Functional Partners:
Vps33b
Vacuolar protein sorting 33B.
   
 
 0.984
Vps33a
VPS33A CORVET/HOPS core subunit.
   
 
 0.950
Vps45
Vacuolar protein sorting 45.
   
  
 0.602
Vps11
VPS11, CORVET/HOPS core subunit.
   
  
 0.592
ENSJJAP00000018327
annotation not available
      
 0.570
Cog7
Component of oligomeric golgi complex 7.
     
 0.549
Vps18
VPS18 CORVET/HOPS core subunit.
      
 0.541
Cog3
Component of oligomeric golgi complex 3.
   
 
 0.483
Cog6
Component of oligomeric golgi complex 6.
   
 
 0.479
Tmem186
Transmembrane protein 186.
      
 0.476
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.