STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hdac6Histone deacetylase 6. (1147 aa)    
Predicted Functional Partners:
ENSJJAP00000008422
annotation not available
    
 0.978
ENSJJAP00000003013
annotation not available
    
  0.959
Vcp
Valosin containing protein.
   
 0.937
Arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.925
Arid4b
AT rich interactive domain 4B (RBP1-like).
    
 0.925
Ep300
E1A binding protein p300.
    
 0.917
Macroh2a2
macroH2A.2 histone.
   
 0.908
Macroh2a1
macroH2A.1 histone.
   
 0.908
ENSJJAP00000009746
annotation not available
    
 0.906
ENSJJAP00000009767
annotation not available
    
 0.905
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.