STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tyw5tRNA-yW synthesizing protein 5. (315 aa)    
Predicted Functional Partners:
Lcmt1
Leucine carboxyl methyltransferase 1.
 
    
 0.786
Hif1a
Hypoxia inducible factor 1, alpha subunit.
    
 0.678
Hif3a
Hypoxia inducible factor 3, alpha subunit.
    
 0.678
Npas1
Neuronal PAS domain protein 1.
    
 0.678
Epas1
Endothelial PAS domain protein 1.
    
 0.678
ENSJJAP00000002795
annotation not available
      
 0.570
Tyw1
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
      
 0.570
Trpa1
Transient receptor potential cation channel, subfamily A, member 1.
    
   0.546
Riox2
Ribosomal oxygenase 2.
      
 0.540
Jmjd8
Jumonji domain containing 8.
      
 0.531
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.