STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Frg1FSHD region gene 1. (258 aa)    
Predicted Functional Partners:
ENSJJAP00000014627
annotation not available
   
   0.964
Prpf8
pre-mRNA processing factor 8.
    
 
 0.924
Prpf19
pre-mRNA processing factor 19.
    
   0.913
Cdc40
Cell division cycle 40.
    
   0.905
Snrpd1
Small nuclear ribonucleoprotein D1.
    
 
 0.846
Eftud2
Elongation factor Tu GTP binding domain containing 2.
    
   0.831
Syf2
SYF2 homolog, RNA splicing factor (S. cerevisiae).
   
   0.811
Cir1
Corepressor interacting with RBPJ, 1.
   
 
 0.809
Snw1
SNW domain containing 1.
   
 
 0.800
Snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.795
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.