STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lhx6LIM homeobox protein 6. (392 aa)    
Predicted Functional Partners:
Ldb1
LIM domain binding 1.
    
 0.916
Ldb2
LIM domain binding 2.
    
 0.799
ENSJJAP00000017707
annotation not available
 
  
 0.673
Figla
Folliculogenesis specific basic helix-loop-helix.
   
 0.654
Ssbp2
Single-stranded DNA binding protein 2.
    
   0.651
Gata3
GATA binding protein 3.
   
 0.604
Dbx1
Developing brain homeobox 1.
    
 
 0.599
Srf
Serum response factor.
    
 0.578
Pax6
Paired box 6.
   
 
 0.564
Pvalb
Parvalbumin.
    
 
 0.563
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.