STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfx4Regulatory factor X, 4 (influences HLA class II expression). (735 aa)    
Predicted Functional Partners:
ENSJJAP00000019948
annotation not available
   
 0.895
Ankra2
Ankyrin repeat, family A (RFXANK-like), 2.
    
 0.814
Atr
Ataxia telangiectasia and Rad3 related.
    
 
 0.809
Tonsl
Tonsoku-like, DNA repair protein.
    
 0.764
Dclk1
Doublecortin-like kinase 1.
     
 0.708
ENSJJAP00000008168
annotation not available
     
 0.546
Pknox2
Pbx/knotted 1 homeobox 2.
      
 0.495
Gmnc
Geminin coiled-coil domain containing.
      
 0.493
Mab21l3
Mab-21-like 3.
      
 0.487
Btaf1
B-TFIID TATA-box binding protein associated factor 1.
    
   0.482
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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