STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSJJAP00000021473annotation not available (674 aa)    
Predicted Functional Partners:
ENSJJAP00000011957
annotation not available
    
 0.839
Mmp13
Matrix metallopeptidase 13.
   
 0.703
Col11a1
Collagen, type XI, alpha 1.
  
0.692
Col2a1
Collagen, type II, alpha 1.
  
0.673
Serpinh1
Serine (or cysteine) peptidase inhibitor, clade H, member 1.
    
 0.650
Plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
 0.626
Plod2
Procollagen lysine, 2-oxoglutarate 5-dioxygenase 2.
   
 0.625
Plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1.
   
 0.620
Tep1
Telomerase associated protein 1.
    
 0.618
Tmc1
Transmembrane channel-like gene family 1.
    
 0.617
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.