STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ubp1Upstream binding protein 1. (540 aa)    
Predicted Functional Partners:
Tfcp2
Transcription factor CP2.
  
 
  
0.792
Tfcp2l1
Transcription factor CP2-like 1.
  
 
  
0.666
Ankrd29
Ankyrin repeat domain 29.
    
   0.606
Nedd8
Neural precursor cell expressed, developmentally down-regulated gene 8.
    
 0.479
Clasp2
CLIP associating protein 2.
      
 0.457
Fbxl20
F-box and leucine-rich repeat protein 20.
      
 0.456
Tmprss15
Transmembrane protease, serine 15.
      
 0.456
Fam57b
Family with sequence similarity 57, member B.
      
 0.447
Mthfd2
Methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase.
    
   0.442
Ralgapb
Ral GTPase activating protein, beta subunit (non-catalytic).
   
    0.437
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.