STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)    
Predicted Functional Partners:
Snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.999
Eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
Prpf8
pre-mRNA processing factor 8.
   
 0.999
Prpf6
pre-mRNA splicing factor 6.
   
 0.998
Sf3b3
Splicing factor 3b, subunit 3.
   
 
 0.997
Ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
  
 0.997
Snrpd2
Small nuclear ribonucleoprotein D2.
   
 0.996
Snrpd1
Small nuclear ribonucleoprotein D1.
   
 0.996
Snrpd3
Small nuclear ribonucleoprotein D3.
   
 0.995
Prpf4
pre-mRNA processing factor 4.
   
 0.993
Your Current Organism:
Jaculus jaculus
NCBI taxonomy Id: 51337
Other names: J. jaculus, lesser Egyptian jerboa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.