STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpm2Tropomyosin beta chain. (284 aa)    
Predicted Functional Partners:
Tnnt2
Troponin T, cardiac muscle.
   
 0.970
Tnni3
Troponin I, cardiac muscle.
   
 0.970
Actc1
LOW QUALITY PROTEIN: actin, alpha cardiac muscle 1.
   
 0.948
Tnnt1
Troponin T, slow skeletal muscle isoform X1.
   
 0.780
Tnni2
Troponin I, fast skeletal muscle.
   
 0.734
Tnnt3
Troponin T3, skeletal, fast.
   
 0.733
ENSCCNP00000023923
annotation not available
   
 0.732
Myl1
Myosin light chain 1/3, skeletal muscle isoform.
   
 0.732
Acta1
Actin, alpha skeletal muscle.
   
 0.716
Smim20
Small integral membrane protein 20.
   
 0.708
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.