STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmco1Calcium load-activated calcium channel isoform X1. (170 aa)    
Predicted Functional Partners:
Ccdc47
Coiled-coil domain-containing protein 47.
    
 
 0.914
Farsb
Phenylalanine--tRNA ligase beta subunit.
 
      0.897
Tmem147
Transmembrane protein 147.
   
 
 0.876
Ncln
Nicalin.
   
 
 0.871
Emc3
ER membrane protein complex subunit 3.
   
 
 0.757
Sec61g
Protein transport protein SEC61 subunit gamma and related proteins.
   
 
 0.745
Emc6
ER membrane protein complex subunit 6.
   
  
 0.745
Rab5if
Uncharacterized protein C20orf24 homolog.
  
 
 0.729
Rpl29
Large subunit ribosomal protein L29e.
   
   0.722
ENSCCNP00000018286
Ribosomal protein L7A.
   
   0.718
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.