STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rabep2Rab GTPase-binding effector protein 2. (567 aa)    
Predicted Functional Partners:
Rabgef1
Rab5 GDP/GTP exchange factor isoform X1.
   
 0.999
Gapvd1
GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1.
   
 0.780
Ankrd27
Ankyrin repeat domain-containing protein 27 isoform X1.
   
 0.780
Zfand3
Zinc finger, AN1-type domain 3.
   
 0.746
Zfand6
AN1-type zinc finger protein 6.
   
 0.746
Zfand5
AN1-type zinc finger protein 5.
   
 0.746
Gga1
ADP-ribosylation factor-binding protein GGA1 isoform X1.
    
 0.695
Gga2
Golgi associated, gamma adaptin ear containing, ARF binding protein 2.
    
 0.695
Mta3
Metastasis-associated protein MTA3 isoform X1.
    
 
 0.585
Kdm8
Lysine-specific demethylase 8 isoform X1.
      
 0.583
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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