STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ubl3Ubiquitin-like protein 3. (108 aa)    
Predicted Functional Partners:
Nedd8
Ubiquitin-like protein Nedd8.
      
 0.609
ENSCCNP00000004911
Autophagy related 12.
      
 0.569
Clpp
ATP-dependent Clp protease proteolytic subunit, mitochondrial.
      
 0.563
Atg5
Autophagy protein 5 isoform X1.
      
 0.556
Atg3
Ubiquitin-like-conjugating enzyme ATG3.
      
 0.552
Atg7
Ubiquitin-like modifier-activating enzyme ATG7 isoform X1.
      
 0.491
ENSCCNP00000006619
annotation not available
      
 0.487
Ubl5
Ubiquitin-like protein 5.
      
 0.487
Ufl1
E3 UFM1-protein ligase 1 isoform X1.
      
 0.481
ENSCCNP00000017842
Ubiquitin-like modifier-activating enzyme 5 isoform X1.
      
 0.470
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.