STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcgf1Polycomb group RING finger protein 1 isoform X1. (259 aa)    
Predicted Functional Partners:
Kdm2b
F-box and leucine-rich repeat protein 10/11.
   
 0.975
Rnf2
E3 ubiquitin-protein ligase RNF1/2.
   
 0.964
Bcor
BCL-6 corepressor isoform X1.
    
 0.952
Rybp
RING1 and YY1-binding protein.
    
 0.949
Ring1
E3 ubiquitin-protein ligase RING1 isoform X1.
   
 0.934
Yaf2
YY1-associated factor 2 isoform X1.
    
 0.917
Bcorl1
BCL-6 corepressor-like protein 1.
    
 0.903
E2f6
Transcription factor E2F6 isoform X1.
    
 0.824
ENSCCNP00000005328
annotation not available
    
 0.772
Cbx2
Chromobox protein homolog 2.
    
 0.753
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.