STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2surpU2 snRNP-associated SURP motif-containing protein isoform X1. (1029 aa)    
Predicted Functional Partners:
Rbm17
RNA binding motif protein 17.
   
 0.978
Cherp
Calcium homeostasis endoplasmic reticulum protein isoform X1.
   
 0.960
Sf3b1
Splicing factor 3B subunit 1 isoform X1.
   
 0.877
Sf3a2
Splicing factor 3A subunit 2.
    
 0.876
Dhx15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43.
   
 0.876
Ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.840
Sf3a3
Splicing factor 3A subunit 3.
   
 0.789
Snrpd1
Small nuclear ribonucleoprotein Sm D1.
   
 0.787
Snrpa1
U2 small nuclear ribonucleoprotein A.
   
  0.784
Sf3a1
Splicing factor 3A subunit 1.
   
0.772
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.