STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prpf38aPre-mRNA-splicing factor 38A isoform X1. (312 aa)    
Predicted Functional Partners:
Mfap1
Microfibrillar-associated protein 1.
   
 0.997
Tcerg1
Transcription elongation regulator 1 isoform X1.
   
 0.991
Zmat2
U4/U6.U5 tri-snRNP component SNU23.
   
 0.982
Smu1
WD40 repeat-containing protein SMU1.
   
 0.904
ENSCCNP00000006619
annotation not available
    
 0.902
Ubl5
Ubiquitin-like protein 5.
    
 0.902
Prpf8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.900
Prpf38b
Pre-mRNA-splicing factor 38B.
     
 
0.900
Ik
IK cytokine.
   
 0.889
Sf3a3
Splicing factor 3A subunit 3.
   
 
 0.884
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.