STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hoxd8Homeobox protein Hox-D8 isoform X1. (292 aa)    
Predicted Functional Partners:
Hoxc9
Homeobox protein HoxB/C/D9.
   
 
0.558
Pbx2
Pre-B-cell leukemia transcription factor 2.
    
 0.551
ENSCCNP00000017138
annotation not available
    
 0.551
ENSCCNP00000017144
annotation not available
    
 0.551
ENSCCNP00000017154
annotation not available
    
 0.551
ENSCCNP00000017161
Pre-B-cell leukemia transcription factor 3.
    
 0.551
Hoxb6
Homeobox protein HoxA/B/C6.
   
 
0.532
Col2a1
Collagen alpha-1(II) chain isoform X1.
      
 0.487
Hoxb7
Homeobox protein HoxA/B7.
   
 
0.483
Hoxc4
Homeobox protein HoxA/B/C/D4.
   
 
0.434
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.