STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCCNP00000006711Late histone H2B.L4-like. (124 aa)    
Predicted Functional Partners:
Hdac1
Histone deacetylase 1/2.
    
 0.754
Hdac3
Histone deacetylase 3 isoform X1.
    
 0.752
Hdac9
LOW QUALITY PROTEIN: histone deacetylase 9-like.
    
 0.739
Hdac7
Histone deacetylase 7 isoform X1.
    
 0.739
Hdac6
Histone deacetylase 6 isoform X1.
    
 0.739
Hdac5
Histone deacetylase 5 isoform X1.
    
 0.739
Hdac4
LOW QUALITY PROTEIN: histone deacetylase 4-like.
    
 0.739
Hdac11
Histone deacetylase 11.
    
 0.737
Leo1
RNA polymerase-associated protein LEO1 isoform X1.
    
 0.709
ENSCCNP00000023058
Histone H2A type 1-like.
 
 0.654
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.