STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ftsj1FtsJ RNA methyltransferase homolog 1 (E. coli). (322 aa)    
Predicted Functional Partners:
Wdr6
WD repeat-containing protein 6 isoform X1.
   
 
 0.988
Thada
LOW QUALITY PROTEIN: thyroid adenoma-associated protein.
   
 
 0.982
Bop1
Ribosome biogenesis protein BOP1.
   
 
 0.882
Nop58
Nucleolar protein 58 isoform X1.
   
 0.878
Pes1
Pescadillo homolog isoform X1.
   
   0.876
ENSCCNP00000031473
annotation not available
   
 
 0.870
Trmt6
TRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 isoform X1.
   
  
 0.865
Noc2l
Nucleolar complex protein 2 homolog.
   
 
 0.864
Rsl24d1
Probable ribosome biogenesis protein RLP24.
   
 
 0.855
Ebna1bp2
Probable rRNA-processing protein EBP2.
   
 
 0.851
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.