STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CampCathelicidin antimicrobial peptide. (172 aa)    
Predicted Functional Partners:
ENSCCNP00000019906
15 kDa protein A-like.
   
 
0.954
Nfkb1
Nuclear factor NF-kappa-B p105 subunit.
   
 
 0.921
Rela
Transcription factor p65 isoform X1.
   
 
 0.907
Jun
Transcription factor AP-1.
     
 0.903
H2-Ea-ps
HLA class II histocompatibility antigen, DR alpha chain.
   
 
 0.807
ENSCCNP00000004690
LOW QUALITY PROTEIN: myeloperoxidase-like.
   
  
 0.786
Ltf
Lactotransferrin.
   
 
 0.732
Pglyrp1
Peptidoglycan recognition protein 1.
   
  
 0.700
Tlr9
Toll-like receptor 9.
   
 
 0.655
ENSCCNP00000005447
annotation not available
   
 
 0.655
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.