STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fat2LOW QUALITY PROTEIN: protocadherin Fat 2. (4350 aa)    
Predicted Functional Partners:
Fjx1
Four-jointed box protein 1.
   
 
 0.569
Slitrk5
SLIT and NTRK-like protein 5.
      
 0.543
Spats2l
SPATS2-like protein.
      
 0.541
Evl
Ena/VASP-like protein isoform X1.
   
 
 0.539
Fastkd1
FAST kinase domain-containing protein 1, mitochondrial isoform X1.
      
 0.510
Lix1
Protein limb expression 1 homolog.
   
 0.495
Lix1l
LIX1-like protein.
   
 0.495
Fat4
Protocadherin Fat 4.
   
0.490
Ano9
LOW QUALITY PROTEIN: anoctamin-9.
      
 0.453
Atn1
Atrophin-1 (dentatorubral-pallidoluysian atrophy protein).
    
 0.438
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.