STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pum3Pumilio homology domain family member 6. (516 aa)    
Predicted Functional Partners:
Brix1
Ribosome biogenesis protein BRX1 homolog.
   
 
 0.982
ENSCCNP00000031473
annotation not available
   
 
 0.982
ENSCCNP00000019423
annotation not available
   
 
 0.981
Ebna1bp2
Probable rRNA-processing protein EBP2.
   
 
 0.976
Rbm28
LOW QUALITY PROTEIN: RNA-binding protein 28.
   
 
 0.966
Nifk
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.963
Ddx18
ATP-dependent RNA helicase DDX18 isoform X1.
   
 
 0.960
ENSCCNP00000002845
annotation not available
   
 
 0.954
Rrs1
Ribosome biogenesis regulatory protein homolog.
   
 
 0.949
Nop58
Nucleolar protein 58 isoform X1.
   
   0.949
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.