STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phrf1PHD and RING finger domain-containing protein 1 isoform X1. (1744 aa)    
Predicted Functional Partners:
Apip
Methylthioribulose-1-phosphate dehydratase isoform X1.
      
 0.540
ENSCCNP00000006937
DNA (cytosine-5)-methyltransferase 1-like.
    
 
 0.505
Snrnp35
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 
 0.499
Sppl3
Signal peptide peptidase-like 3.
      
 0.495
ENSCCNP00000018632
annotation not available
   
  
 0.484
Gtf3c1
LOW QUALITY PROTEIN: general transcription factor 3C polypeptide 1.
   
  
 0.483
Pxk
PX domain-containing protein kinase-like protein isoform X1.
      
 0.452
Trnt1
CCA tRNA nucleotidyltransferase 1, mitochondrial.
      
 0.446
Smg5
Protein SMG5.
   
    0.443
ENSCCNP00000020660
annotation not available
   
    0.443
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.