STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mkrn2Probable E3 ubiquitin-protein ligase makorin-2 isoform X1. (415 aa)    
Predicted Functional Partners:
Hagh
Hydroxyacylglutathione hydrolase, mitochondrial isoform X1.
 
 
  
 0.731
Trip12-2
E3 ubiquitin-protein ligase TRIP12 isoform X1.
     
 0.617
Trip12
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12-like.
     
 0.617
ENSCCNP00000029050
E3 ubiquitin-protein ligase TRIP12-like isoform X1.
     
 0.617
Cep131
Centrosomal protein of 131 kDa isoform X1.
   
 
 0.605
Camsap3
Calmodulin-regulated spectrin-associated protein 3 isoform X1.
   
  
 0.583
Zfp598
E3 ubiquitin-protein ligase ZNF598.
      
 0.578
Paip1
Polyadenylate-binding protein-interacting protein 1 isoform X1.
    
 
 0.565
Tsen2
TRNA-splicing endonuclease subunit Sen2 isoform X1.
 
    
 0.485
Otud4
OTU domain-containing protein 4 isoform X1.
   
 
 0.469
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.