STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCCNP00000011054Zinc finger protein 655. (543 aa)    
Predicted Functional Partners:
Trim28
Transcription intermediary factor 1-beta isoform X1.
   
 0.433
Ube2b
Ubiquitin-conjugating enzyme E2 B isoform X1.
   
 0.428
Med31
Mediator of RNA polymerase II transcription subunit 31.
    
 
 0.424
Ube2v1
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
     
 0.424
Sumo3
Small ubiquitin-related modifier 3.
    
 0.423
Med17
Mediator complex subunit 17.
    
 
 0.418
Kpna4
Importin subunit alpha-4/3.
    
 0.411
Zfp414
Zinc finger protein 414 isoform X1.
      
 0.411
Ipo4
Importin-4 isoform X1.
   
 
 0.409
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.