STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pkd2LOW QUALITY PROTEIN: polycystin-2. (763 aa)    
Predicted Functional Partners:
ENSCCNP00000028098
annotation not available
    
 
0.783
Pkdrej
Polycystic kidney disease and receptor for egg jelly-related protein.
    
0.768
Trpc1
Transient receptor potential cation channel subfamily C member 1.
    
 
 0.753
ENSCCNP00000022166
annotation not available
      
 0.695
Exoc5
Exocyst complex component 5.
     
 0.675
Trpv4
Transient receptor potential cation channel subfamily V member 4 isoform X1.
      
 0.665
Arl13b
ADP-ribosylation factor-like protein 13B.
      
 0.600
Ibsp
LOW QUALITY PROTEIN: bone sialoprotein 2.
    
 
 0.592
Adcy5
Adenylate cyclase type 5.
      
 0.585
Rho
Rhodopsin.
     
 0.576
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.