STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usb1U6 snRNA phosphodiesterase isoform X1. (267 aa)    
Predicted Functional Partners:
Prpf19
Pre-mRNA-processing factor 19.
    
   0.828
Lsm2
U6 snRNA-associated Sm-like protein LSm2.
      
 0.655
Xab2
Pre-mRNA-splicing factor SYF1 isoform X1.
    
 
 0.630
Recql4
RecQ protein-like 4.
      
 0.573
Snw1
LOW QUALITY PROTEIN: SNW domain-containing protein 1.
    
 
 0.545
Cdc5l
Cell division cycle 5-like protein isoform X1.
    
   0.532
ENSCCNP00000003416
Squamous cell carcinoma antigen recognized by T-cells 3-like.
    
 
 0.513
Sart3
LOW QUALITY PROTEIN: squamous cell carcinoma antigen recognized by T-cells 3.
    
 
 0.513
ENSCCNP00000030250
annotation not available
    
   0.499
ENSCCNP00000007300
Peptidylprolyl isomerase E (cyclophilin E).
    
   0.493
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.