STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ubqln5Ubiquilin-like protein. (518 aa)    
Predicted Functional Partners:
Nbr1
Next to BRCA1 gene 1 protein isoform X1.
   
 0.873
Ubxn7
UBX domain-containing protein 7.
    
 0.823
Mysm1
LOW QUALITY PROTEIN: histone H2A deubiquitinase MYSM1.
   
 0.817
Psmd4
LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 4.
   
 0.810
Ube2v1
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
   
 0.779
ENSCCNP00000026510
annotation not available
   
 0.779
Traf7
E3 ubiquitin-protein ligase TRAF7 isoform X1.
    
 0.753
Uba52
Ubiquitin-60S ribosomal protein L40 isoform X1.
   
 0.751
Rpl19
Large subunit ribosomal protein L19e.
   
 0.739
ENSCCNP00000005380
Katanin p60 ATPase-containing subunit A-like 2.
   
 0.734
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.