STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mindy1Ubiquitin carboxyl-terminal hydrolase MINDY-1/2. (467 aa)    
Predicted Functional Partners:
Uba52
Ubiquitin-60S ribosomal protein L40 isoform X1.
   
   0.794
ENSCCNP00000008906
annotation not available
    
   0.705
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
    
   0.705
Ubb
LOW QUALITY PROTEIN: polyubiquitin-B.
    
   0.584
ENSCCNP00000025736
annotation not available
    
   0.584
ENSCCNP00000030934
annotation not available
    
   0.584
Dennd4c
DENN domain-containing protein 4C isoform X1.
      
 0.574
Ankfy1
Ankyrin repeat and FYVE domain containing 1.
      
 0.568
Setd3
Histone-lysine N-methyltransferase setd3.
    
 0.506
Mut
Methylmalonyl-CoA mutase, mitochondrial.
    
 0.506
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.