STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx27Probable ATP-dependent RNA helicase DDX27 isoform X1. (763 aa)    
Predicted Functional Partners:
Pes1
Pescadillo homolog isoform X1.
   
 0.980
Rbm28
LOW QUALITY PROTEIN: RNA-binding protein 28.
   
 0.979
Nifk
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.968
Bop1
Ribosome biogenesis protein BOP1.
   
 0.963
Wdr12
Ribosome biogenesis protein WDR12.
   
 0.957
Utp14a
U3 small nucleolar RNA-associated protein 14 homolog A.
   
 0.949
Noc2l
Nucleolar complex protein 2 homolog.
   
 
 0.948
Ftsj3
AdoMet-dependent rRNA methyltransferase SPB1.
   
 0.947
Utp18
U3 small nucleolar RNA-associated protein 18 homolog.
   
 0.939
Krr1
KRR1 small subunit processome component homolog isoform X1.
   
 0.937
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.