STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Raver1Ribonucleoprotein PTB-binding 1 isoform X1. (760 aa)    
Predicted Functional Partners:
ENSCCNP00000031598
LOW QUALITY PROTEIN: vinculin-like.
    
 
 0.921
ENSCCNP00000031580
Vinculin-like.
    
 
 0.844
Cherp
Calcium homeostasis endoplasmic reticulum protein isoform X1.
   
  
 0.739
Hnrnpl
Heterogeneous nuclear ribonucleoprotein L.
   
 0.704
Ptbp1
Polypyrimidine tract-binding protein 1 isoform X1.
   
 0.656
Hnrnpll
Heterogeneous nuclear ribonucleoprotein L-like.
   
 0.571
Srsf2
LOW QUALITY PROTEIN: serine/arginine-rich splicing factor 2.
     
 0.547
Ptbp2
Polypyrimidine tract-binding protein 2.
   
 0.523
ENSCCNP00000016730
annotation not available
   
 0.523
Ndor1
NADPH-dependent diflavin oxidoreductase 1 isoform X1.
   
    0.516
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.