STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fdft1Farnesyl-diphosphate farnesyltransferase. (473 aa)    
Predicted Functional Partners:
Sqle
Squalene monooxygenase.
  
 
 0.994
Fdps
Farnesyl pyrophosphate synthase isoform X1.
  
 0.965
Ggps1
Geranylgeranyl diphosphate synthase, type III.
  
 0.954
Pdss2
Decaprenyl-diphosphate synthase subunit 2.
  
 0.952
Lss
Lanosterol synthase isoform X1.
 
  
 0.938
ENSCCNP00000032875
Lanosterol 14-alpha demethylase.
  
 
 0.937
Sc5d
Delta7-sterol 5-desaturase.
  
 
 0.926
Hsd17b7
17beta-estradiol 17-dehydrogenase / 3beta-hydroxysteroid 3-dehydrogenase.
   
 
 0.909
Pyroxd2
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2.
  
 
 0.876
Erg28
Probable ergosterol biosynthetic protein 28.
   
 
 0.876
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.