STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lnx1E3 ubiquitin-protein ligase LNX isoform X1. (732 aa)    
Predicted Functional Partners:
Numb
Protein numb homolog isoform X1.
   
 
 0.818
Uba52
Ubiquitin-60S ribosomal protein L40 isoform X1.
    
 0.812
ENSCCNP00000017777
Ubiquitin-conjugating enzyme E2 N.
   
 0.756
ENSCCNP00000008906
annotation not available
   
  0.670
Rps27a
Ubiquitin-small subunit ribosomal protein S27Ae.
   
  0.670
Numbl
Numb-like protein isoform X1.
   
 
 0.656
Cxadr
Coxsackievirus and adenovirus receptor isoform X1.
   
 0.624
Stimate
STIM activating enhancer.
    
 0.609
ENSCCNP00000007412
Melanoma-associated antigen B10-like.
   
 
 0.590
Pick1
PRKCA-binding protein.
   
0.570
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.