STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Use1Unconventional SNARE in the endoplasmic reticulum protein 1. (273 aa)    
Predicted Functional Partners:
Stx18
Syntaxin 18.
   
 0.996
Bnip1
Protein transport protein SEC20.
    
 0.996
Sec22b
Vesicle-trafficking protein SEC22b.
    
 0.994
Rint1
RAD50-interacting protein 1 isoform X1.
    
 0.980
Nbas
Neuroblastoma amplified sequence.
    
 0.972
Zw10
LOW QUALITY PROTEIN: centromere/kinetochore protein zw10 homolog.
    
 0.972
Snx15
Sorting nexin-15 isoform X1.
    
 0.950
Rps6kc1
Ribosomal protein S6 kinase delta-1 isoform X1.
    
 0.950
Ykt6
Synaptobrevin homolog YKT6.
    
 
 0.902
Stx5
Syntaxin 5.
    
 
 0.876
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.