STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arl13bADP-ribosylation factor-like protein 13B. (429 aa)    
Predicted Functional Partners:
Pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta.
     
 0.842
Ift88
LOW QUALITY PROTEIN: intraflagellar transport protein 88 homolog.
    
 0.809
Inpp5e
72 kDa inositol polyphosphate 5-phosphatase isoform X1.
   
 
 0.801
Cog8
Conserved oligomeric Golgi complex subunit 8.
   
 0.746
Ift22
Intraflagellar transport protein 22 homolog.
    
 
 0.706
Ric1
RAB6A-GEF complex partner protein 1 isoform X1.
    
 0.700
Arl3
ADP-ribosylation factor-like protein 3.
   
0.699
Cog6
Conserved oligomeric Golgi complex subunit 6.
    
 0.684
Cplane2
LOW QUALITY PROTEIN: REM2- and Rab-like small GTPase 1.
    
 0.677
Vps53
Vacuolar protein sorting-associated protein 53 homolog.
     
 0.663
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.