STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RfxankRegulatory factor X-associated ankyrin-containing protein. (259 aa)    
Predicted Functional Partners:
Rfx5
DNA-binding protein RFX5.
   
 0.994
Ciita
MHC class II transactivator isoform X1.
   
 0.973
Rfxap
Regulatory factor X-associated protein.
    
 
 0.849
Hdac4
LOW QUALITY PROTEIN: histone deacetylase 4-like.
   
 0.833
Rfx1
MHC class II regulatory factor RFX1.
   
 
 0.694
Rfx7
DNA-binding protein RFX7 isoform X1.
   
 
 0.584
Creb1
Cyclic AMP-responsive element-binding protein 1 isoform X1.
      
 0.566
Nlrc5
NLR family CARD domain containing 5.
   
 
 0.566
Hdac5
Histone deacetylase 5 isoform X1.
   
 0.541
Mef2b
Myocyte enhancer factor 2B.
    
 
 0.535
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.