STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab33aRas-related protein Rab-33A. (237 aa)    
Predicted Functional Partners:
Ric1
RAB6A-GEF complex partner protein 1 isoform X1.
    
 0.767
ENSCCNP00000001880
Trafficking protein particle complex 1.
    
 0.740
Trappc4
Trafficking protein particle complex subunit 4.
    
 0.731
Trappc5
Trafficking protein particle complex subunit 5.
    
 0.726
Trappc2
Trafficking protein particle complex 2.
    
 0.726
Tbc1d25
TBC1 domain family member 25 isoform X1.
     
 0.722
Trappc8
Trafficking protein particle complex subunit 8.
    
 0.715
Uso1
General vesicular transport factor p115 isoform X1.
   
 0.664
Rabggtb
Geranylgeranyl transferase type-2 subunit beta.
    
 0.662
Gdi1
Rab GDP dissociation inhibitor alpha.
   
 0.652
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.