STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sema6cLOW QUALITY PROTEIN: semaphorin-6C. (944 aa)    
Predicted Functional Partners:
Plxna2
Plexin-A2.
    
 0.643
Plxna1
Plexin-A1.
    
 0.615
ENSCCNP00000012583
Plexin-A1-like.
    
 0.615
Met
Hepatocyte growth factor receptor isoform X1.
    
 0.606
Mst1r
Macrophage-stimulating protein receptor.
    
 0.606
Plxnd1
LOW QUALITY PROTEIN: plexin-D1.
    
 0.591
Nrp1
Neuropilin-1 isoform X1.
    
 0.591
Plxnc1
Plexin-C1.
    
 0.505
ENSCCNP00000025109
Plexin-C1-like.
    
 0.505
ENSCCNP00000002708
annotation not available
    
 0.499
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.