STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl1DNA topoisomerase 2-associated protein PAT1. (875 aa)    
Predicted Functional Partners:
Lsm1
U6 snRNA-associated Sm-like protein LSm1.
    
 0.997
Treh-2
LOW QUALITY PROTEIN: trehalase.
   
 0.997
Dcp2
M7GpppN-mRNA hydrolase isoform X1.
    
 0.996
Lsm7
U6 snRNA-associated Sm-like protein LSm7.
    
 0.996
Lsm2
U6 snRNA-associated Sm-like protein LSm2.
   
 0.995
Lsm4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.994
Lsm6
U6 snRNA-associated Sm-like protein LSm6.
    
 0.992
Lsm5
U6 snRNA-associated Sm-like protein LSm5 isoform X1.
   
 0.992
Edc3
Enhancer of mRNA-decapping protein 3.
    
 0.989
Edc4
Enhancer of mRNA-decapping protein 4.
    
 0.985
Your Current Organism:
Castor canadensis
NCBI taxonomy Id: 51338
Other names: American beaver, C. canadensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.